object.microrna
Class Mttdata

java.lang.Object
  object.microrna.Mttdata

All Implemented Interfaces:

java.io.Serializable

public class Mttdata
extends java.lang.Object
implements java.io.Serializable

Description
Infos : KLB - IPMC - 04/2008

See Also:

Serialized Form

Field Summary

private double	aveExpr aveExpr
private double	cdf_down cdf_down
private double	cdf_up cdf_up
private double	enrichment_down enrichment_down
private double	enrichment_up enrichment_up
private int	expected_down expected_down
private int	expected_up expected_up
private java.util.Hashtable	hashDown hashDown
private java.util.Hashtable	hashPredicted hashPredicted
private java.util.Hashtable	hashSymbol accession
private java.util.Hashtable	hashUp hashUp
private double	logFC logFC
private MapTarget	mapTargetDown
private MapTarget	mapTargetUp
private java.lang.String	mature_acc mature_acc
private java.lang.String	mature_name accession
private int	nb_predict nb_predict
private int	oligo_adhoc_id oligo_adhoc_id
private int	organism_id
private java.lang.String	prefam_acc prefam_acc
private java.lang.String	prefam_id prefam_id
private java.util.Vector	vectorMatch

Constructor Summary

Mttdata(java.lang.String mature_name, java.lang.String mature_acc)
Default constructor

Method Summary

void	addMatch(java.lang.String symbol, int genbank_gene_id)
double	getAveExpr() aveExpr
double	getCdf_down() cdf_down
double	getCdf_up() cdf_up
double	getEnrichement_down() enrichment_down
double	getEnrichement_up() enrichment_up
int	getExpected_down() expected_repressed
int	getExpected_up() expected_expressed
java.util.Hashtable	getHashDown() hashDown
java.util.Hashtable	getHashPredicted() hashPredicted
java.util.Hashtable	getHashSymbol() vectorSymbol
java.util.Hashtable	getHashUp() hashUp
double	getLogFC() logFC
MapTarget	getMapTargetDown() MapTargetDown
MapTarget	getMapTargetUp() MapTargetUp
java.lang.String	getMature_acc() mature_acc
java.lang.String	getMature_name() mature_name
int	getNb_predict() nb_predict
int	getOligo_adhoc_id() oligo_adhoc_id
java.lang.String	getPrefam_acc() prefam_acc
java.lang.String	getPrefam_id() prefam_id
java.util.Vector	getVectorMatch() vectorMatch
void	loadMapTarget(int mirna_target_tool_id, java.lang.String type, java.util.Hashtable hashSetReference)
void	setAveExpr(double aveExpr)
void	setCdf_down(double cdf_down)
void	setCdf_up(double cdf_up)
void	setEnrichement_down(double enrichment_down)
void	setEnrichement_up(double enrichment_up)
void	setExpected_down(int expected_down)
void	setExpected_up(int expected_up)
void	setHashDown(java.util.Hashtable hashDown)
void	setHashPredicted(java.util.Hashtable hashPredicted)
void	setHashSymbol(java.util.Hashtable hashSymbol)
void	setHashUp(java.util.Hashtable hashUp)
void	setLogFC(double logFC)
void	setMapTargetDown(MapTarget mapTargetDown)
void	setMapTargetUp(MapTarget mapTargetUp)
void	setMature_acc(java.lang.String mature_acc)
void	setMature_name(java.lang.String mature_name)
void	setNb_predict(int nb_predict)
void	setOligo_adhoc_id(int oligo_adhoc_id)
void	setPrefam_acc(java.lang.String prefam_acc)
void	setPrefam_id(java.lang.String prefam_id)
void	setVectorMatch(java.util.Vector vectorMatch)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

mature_acc

private java.lang.String mature_acc

mature_acc

oligo_adhoc_id

private int oligo_adhoc_id

oligo_adhoc_id

mature_name

private java.lang.String mature_name

accession

hashSymbol

private java.util.Hashtable hashSymbol

accession

prefam_id

private java.lang.String prefam_id

prefam_id

prefam_acc

private java.lang.String prefam_acc

prefam_acc

nb_predict

private int nb_predict

nb_predict

expected_down

private int expected_down

expected_down

expected_up

private int expected_up

expected_up

enrichment_up

private double enrichment_up

enrichment_up

enrichment_down

private double enrichment_down

enrichment_down

hashUp

private java.util.Hashtable hashUp

hashUp

hashDown

private java.util.Hashtable hashDown

hashDown

hashPredicted

private java.util.Hashtable hashPredicted

hashPredicted

aveExpr

private double aveExpr

aveExpr

logFC

private double logFC

logFC

cdf_up

private double cdf_up

cdf_up

cdf_down

private double cdf_down

cdf_down

vectorMatch

private java.util.Vector vectorMatch

mapTargetUp

private MapTarget mapTargetUp

mapTargetDown

private MapTarget mapTargetDown

organism_id

private int organism_id

Constructor Detail

Mttdata

public Mttdata(java.lang.String mature_name,
               java.lang.String mature_acc)

Default constructor

Method Detail

getMature_acc

public java.lang.String getMature_acc()

mature_acc

setMature_acc

public void setMature_acc(java.lang.String mature_acc)

getOligo_adhoc_id

public int getOligo_adhoc_id()

oligo_adhoc_id

setOligo_adhoc_id

public void setOligo_adhoc_id(int oligo_adhoc_id)

getMature_name

public java.lang.String getMature_name()

mature_name

setMature_name

public void setMature_name(java.lang.String mature_name)

getHashSymbol

public java.util.Hashtable getHashSymbol()

vectorSymbol

setHashSymbol

public void setHashSymbol(java.util.Hashtable hashSymbol)

getPrefam_id

public java.lang.String getPrefam_id()

prefam_id

setPrefam_id

public void setPrefam_id(java.lang.String prefam_id)

getPrefam_acc

public java.lang.String getPrefam_acc()

prefam_acc

setPrefam_acc

public void setPrefam_acc(java.lang.String prefam_acc)

getNb_predict

public int getNb_predict()

nb_predict

setNb_predict

public void setNb_predict(int nb_predict)

getExpected_down

public int getExpected_down()

expected_repressed

setExpected_down

public void setExpected_down(int expected_down)

getExpected_up

public int getExpected_up()

expected_expressed

setExpected_up

public void setExpected_up(int expected_up)

getEnrichement_down

public double getEnrichement_down()

enrichment_down

setEnrichement_down

public void setEnrichement_down(double enrichment_down)

getEnrichement_up

public double getEnrichement_up()

enrichment_up

setEnrichement_up

public void setEnrichement_up(double enrichment_up)

getHashUp

public java.util.Hashtable getHashUp()

hashUp

setHashUp

public void setHashUp(java.util.Hashtable hashUp)

getHashDown

public java.util.Hashtable getHashDown()

hashDown

setHashDown

public void setHashDown(java.util.Hashtable hashDown)

getHashPredicted

public java.util.Hashtable getHashPredicted()

hashPredicted

setHashPredicted

public void setHashPredicted(java.util.Hashtable hashPredicted)

getAveExpr

public double getAveExpr()

aveExpr

setAveExpr

public void setAveExpr(double aveExpr)

getLogFC

public double getLogFC()

logFC

setLogFC

public void setLogFC(double logFC)

getCdf_up

public double getCdf_up()

cdf_up

setCdf_up

public void setCdf_up(double cdf_up)

getCdf_down

public double getCdf_down()

cdf_down

setCdf_down

public void setCdf_down(double cdf_down)

getVectorMatch

public java.util.Vector getVectorMatch()

vectorMatch

setVectorMatch

public void setVectorMatch(java.util.Vector vectorMatch)

getMapTargetUp

public MapTarget getMapTargetUp()

MapTargetUp

setMapTargetUp

public void setMapTargetUp(MapTarget mapTargetUp)

getMapTargetDown

public MapTarget getMapTargetDown()

MapTargetDown

setMapTargetDown

public void setMapTargetDown(MapTarget mapTargetDown)

addMatch

public void addMatch(java.lang.String symbol,
                     int genbank_gene_id)

loadMapTarget

public void loadMapTarget(int mirna_target_tool_id,
                          java.lang.String type,
                          java.util.Hashtable hashSetReference)