object.microrna
Class MicroTopTable

java.lang.Object
  object.microrna.MicroTopTable

All Implemented Interfaces:

java.io.Serializable

public class MicroTopTable
extends java.lang.Object
implements java.io.Serializable

Description
Infos : KLB - IPMC - 04/2008

See Also:

Serialized Form

Field Summary

private double	apv_cutoff adjusted p.value cutoff
private double	avgexpr avgexpr
private double	b_cutoff b_cutoff
private java.util.Hashtable	hashMttdata
private Graph	imgA
private Graph	imgB
private Graph	imgDOWN
private Graph	imgM
private Graph	imgUP
private double	logfc logfc
private java.lang.String	lst_genes_down
private java.lang.String	lst_genes_up
private java.lang.String	mature_acc auto_mature
private double	mfe_cutoff mfe_cutoff
private int	nb_all_down
private int	nb_all_up
private int	nb_gene
private int	nb_gene_a
private int	nb_gene_filt
private int	software_id software
private boolean	tf
private Toptable	toptable_gene toptable_gene
private Toptable	toptable_micro toptable_micro
private java.util.Vector	vectorKeys

Constructor Summary

MicroTopTable()
Default constructor

Method Summary

double	getApv_cutoff() adjusted p.value cutoff
double	getAvgexpr() avgexpr
double	getB_cutoff() b_cutoff
java.util.Hashtable	getHashMttdata() hashMttdata
Graph	getImgA() imgA
Graph	getImgB() imgB
Graph	getImgDOWN() imgDOWN
Graph	getImgM() imgM
Graph	getImgUP() imgUP
double	getLogfc() logfc
java.lang.String	getLst_genes_down() lst_genes_down
java.lang.String	getLst_genes_up() lst_genes_up
java.lang.String	getMature_acc() auto_mature
double	getMfe_cutoff() mfe_cutoff
int	getNb_all_down()
int	getNb_all_up()
int	getNb_gene_a()
int	getNb_gene_filt()
int	getNb_gene()
int	getSoftware_id() software_id
Toptable	getToptable_gene() toptable_gene
Toptable	getToptable_micro() toptable_micro
java.util.Vector	getVectorKeys() Vector of keys ordered
void	initHashMttdata()
void	loadParams(java.util.Hashtable params) This function load parameters from Html Form.
void	makeGraphs(java.util.Hashtable hashTTData, java.util.Hashtable hashStats)
void	proceedSearch() This function proceed to the search.
void	setApv_cutoff(double apv_cutoff)
void	setAvgexpr(double avgexpr)
void	setB_cutoff(double b_cutoff)
void	setHashMttdata(java.util.Hashtable hashMttdata)
void	setImgA(Graph imgA)
void	setImgB(Graph imgB)
void	setImgDOWN(Graph imgDOWN)
void	setImgM(Graph imgM)
void	setImgUP(Graph imgUP)
void	setLogfc(double logfc)
void	setLst_genes_down(java.lang.String lst_genes_down)
void	setLst_genes_up(java.lang.String lst_genes_up)
void	setMature_acc(java.lang.String mature_acc)
void	setMfe_cutoff(double mfe_cutoff)
void	setSoftware_id(int software_id)
void	setToptable_gene(Toptable toptable_gene)
void	setToptable_micro(Toptable toptable_micro)
void	setVectorKeys(java.util.Vector vectorKeys)
void	sortMyVector(java.lang.String type)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

toptable_gene

private Toptable toptable_gene

toptable_gene

toptable_micro

private Toptable toptable_micro

toptable_micro

logfc

private double logfc

logfc

avgexpr

private double avgexpr

avgexpr

b_cutoff

private double b_cutoff

b_cutoff

apv_cutoff

private double apv_cutoff

adjusted p.value cutoff

mfe_cutoff

private double mfe_cutoff

mfe_cutoff

mature_acc

private java.lang.String mature_acc

auto_mature

software_id

private int software_id

software

tf

private boolean tf

hashMttdata

private java.util.Hashtable hashMttdata

vectorKeys

private java.util.Vector vectorKeys

nb_gene

private int nb_gene

nb_gene_a

private int nb_gene_a

nb_gene_filt

private int nb_gene_filt

nb_all_up

private int nb_all_up

nb_all_down

private int nb_all_down

lst_genes_up

private java.lang.String lst_genes_up

lst_genes_down

private java.lang.String lst_genes_down

imgA

private Graph imgA

imgB

private Graph imgB

imgM

private Graph imgM

imgUP

private Graph imgUP

imgDOWN

private Graph imgDOWN

Constructor Detail

MicroTopTable

public MicroTopTable()

Default constructor

Method Detail

getToptable_gene

public Toptable getToptable_gene()

toptable_gene

setToptable_gene

public void setToptable_gene(Toptable toptable_gene)

getToptable_micro

public Toptable getToptable_micro()

toptable_micro

setToptable_micro

public void setToptable_micro(Toptable toptable_micro)

getLogfc

public double getLogfc()

logfc

setLogfc

public void setLogfc(double logfc)

getAvgexpr

public double getAvgexpr()

avgexpr

setAvgexpr

public void setAvgexpr(double avgexpr)

getB_cutoff

public double getB_cutoff()

b_cutoff

setB_cutoff

public void setB_cutoff(double b_cutoff)

getApv_cutoff

public double getApv_cutoff()

adjusted p.value cutoff

setApv_cutoff

public void setApv_cutoff(double apv_cutoff)

getMfe_cutoff

public double getMfe_cutoff()

mfe_cutoff

setMfe_cutoff

public void setMfe_cutoff(double mfe_cutoff)

getMature_acc

public java.lang.String getMature_acc()

auto_mature

setMature_acc

public void setMature_acc(java.lang.String mature_acc)

getSoftware_id

public int getSoftware_id()

software_id

setSoftware_id

public void setSoftware_id(int software_id)

getHashMttdata

public java.util.Hashtable getHashMttdata()

hashMttdata

setHashMttdata

public void setHashMttdata(java.util.Hashtable hashMttdata)

getVectorKeys

public java.util.Vector getVectorKeys()

Vector of keys ordered

setVectorKeys

public void setVectorKeys(java.util.Vector vectorKeys)

getNb_gene

public int getNb_gene()

getNb_gene_a

public int getNb_gene_a()

getNb_gene_filt

public int getNb_gene_filt()

getNb_all_up

public int getNb_all_up()

getNb_all_down

public int getNb_all_down()

getLst_genes_up

public java.lang.String getLst_genes_up()

lst_genes_up

setLst_genes_up

public void setLst_genes_up(java.lang.String lst_genes_up)

getLst_genes_down

public java.lang.String getLst_genes_down()

lst_genes_down

setLst_genes_down

public void setLst_genes_down(java.lang.String lst_genes_down)

getImgA

public Graph getImgA()

imgA

setImgA

public void setImgA(Graph imgA)

getImgM

public Graph getImgM()

imgM

setImgM

public void setImgM(Graph imgM)

getImgB

public Graph getImgB()

imgB

setImgB

public void setImgB(Graph imgB)

getImgUP

public Graph getImgUP()

imgUP

setImgUP

public void setImgUP(Graph imgUP)

getImgDOWN

public Graph getImgDOWN()

imgDOWN

setImgDOWN

public void setImgDOWN(Graph imgDOWN)

loadParams

public void loadParams(java.util.Hashtable params)

This function load parameters from Html Form.

See Also:

proceedSearch()

initHashMttdata

public void initHashMttdata()

proceedSearch

public void proceedSearch()

This function proceed to the search.

sortMyVector

public void sortMyVector(java.lang.String type)

makeGraphs

public void makeGraphs(java.util.Hashtable hashTTData,
                       java.util.Hashtable hashStats)