object.microrna
Class MicroSite

java.lang.Object
  object.microrna.MicroSite

All Implemented Interfaces:

java.io.Serializable

public class MicroSite
extends java.lang.Object
implements java.io.Serializable

Description
Infos : KLB - IPMC - 05/2007

See Also:

Serialized Form

Field Summary

private double	evalue Seed_match searched
private java.util.Hashtable	hashMstdata Results for this search
private java.lang.String	micro_list micro_list
private java.lang.String	organism Organism
private java.lang.String	sonde_type sonde_type
private java.util.Vector	vectorKeys Vector of keys ordered
private java.util.Vector	vectorSequence Vector of sequence

Constructor Summary

MicroSite()
Default constructor

Method Summary

void	doRNAfold()
int	findSequence(java.lang.String seq, java.lang.String big_seq)
java.lang.String	getDNA(java.lang.String micro)
double	getEvalue() evalue
java.util.Hashtable	getHashMstdata() Results for this search
java.lang.String	getMicro_list() micro_list
java.lang.String	getOrganism() Organism
java.lang.String	getReverse(java.lang.String micro)
java.lang.String	getSonde_type() sonde_type
java.util.Vector	getVectorKeys() Vector of keys ordered
java.util.Vector	getVectorSequence() Vector of sequence
void	initSequence()
void	loadParams(java.util.Hashtable params)
void	proceedSearch()
void	setEvalue(double evalue)
void	setHashMstdata(java.util.Hashtable hashMstdata)
void	setMicro_list(java.lang.String micro_list)
void	setOrganism(java.lang.String organism)
void	setSonde_type(java.lang.String sonde_type)
void	setVectorKeys(java.util.Vector vectorKeys)
void	setVectorSequence(java.util.Vector vectorSequence)
void	sortMyVector(java.lang.String type)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

evalue

private double evalue

Seed_match searched

organism

private java.lang.String organism

Organism

sonde_type

private java.lang.String sonde_type

sonde_type

micro_list

private java.lang.String micro_list

micro_list

vectorSequence

private java.util.Vector vectorSequence

Vector of sequence

hashMstdata

private java.util.Hashtable hashMstdata

Results for this search

vectorKeys

private java.util.Vector vectorKeys

Vector of keys ordered

Constructor Detail

MicroSite

public MicroSite()

Default constructor

Method Detail

getEvalue

public double getEvalue()

evalue

setEvalue

public void setEvalue(double evalue)

getOrganism

public java.lang.String getOrganism()

Organism

setOrganism

public void setOrganism(java.lang.String organism)

getSonde_type

public java.lang.String getSonde_type()

sonde_type

setSonde_type

public void setSonde_type(java.lang.String sonde_type)

getMicro_list

public java.lang.String getMicro_list()

micro_list

setMicro_list

public void setMicro_list(java.lang.String micro_list)

getVectorSequence

public java.util.Vector getVectorSequence()

Vector of sequence

setVectorSequence

public void setVectorSequence(java.util.Vector vectorSequence)

getHashMstdata

public java.util.Hashtable getHashMstdata()

Results for this search

setHashMstdata

public void setHashMstdata(java.util.Hashtable hashMstdata)

getVectorKeys

public java.util.Vector getVectorKeys()

Vector of keys ordered

setVectorKeys

public void setVectorKeys(java.util.Vector vectorKeys)

loadParams

public void loadParams(java.util.Hashtable params)

proceedSearch

public void proceedSearch()

initSequence

public void initSequence()

getReverse

public java.lang.String getReverse(java.lang.String micro)

getDNA

public java.lang.String getDNA(java.lang.String micro)

findSequence

public int findSequence(java.lang.String seq,
                        java.lang.String big_seq)

sortMyVector

public void sortMyVector(java.lang.String type)

doRNAfold

public void doRNAfold()