object.microarray
Class Labeling

java.lang.Object
  object.microarray.Labeling

All Implemented Interfaces:

java.io.Serializable

public class Labeling
extends java.lang.Object
implements java.io.Serializable

Description
A Labeling Object correspond to a channel hybridize on a microarray
Infos : KLB - IPMC - 02/2007

See Also:

Serialized Form

Field Summary

private double	amount_input ARN Amount input of this Labeling object
private double	amount_output ARN Amount output of this Labeling object
private double	ampli_amount RNA available_amount after amplification
private double	ampli_concentration Concentration of ARN after amplification
private java.lang.String	cell_type cell_type corresponding to this Subject object
private double	cy_pmol Cy pmol for this Extraction Object
private java.util.Date	date_extraction Date of creation of this Extraction object
private java.util.Date	date_labeling Creation Date this Labeling object
private java.util.Date	date_sample Creation date of this Sample object
private java.util.Date	date_subject Creation date of this Subject object
private java.lang.String	disease Disease of this Subject object
private java.lang.String	dvt_stage Developpment stage of this Subject object
private double	ext_amount RNA available_amount of this Extraction object
private double	ext_concentration Concentration of ARN of this Extraction object
private java.lang.String	extraction_ref Reference of this Extraction object
private java.lang.String	genotype Genotype of this Subject object
private java.lang.String	grade Cancer grade of this Subject object
private java.lang.String	histology Cancer histology of this Subject object
private int	hybridization_id ID of the corresponding Hybridization Object
private int	labeling_id ID of this Labeling object
private java.lang.String	labeling_ref Reference of this Labeling object
private Labeling_type	labeling_type Labeling_type Object of this Labeling object
private java.lang.String	mark Mark type for this Labeling Object
private Nucleic_acid_type	nucleic_acid_type Nucleic acid type of this Extraction object
private Organism	organism Organism corresponding to this Subject object
private java.lang.String	origin Origin of this Subject object
private Protocol_amplification	protocol_amplification Protocol_amplification Object for this Extraction object
private Protocol_extraction	protocol_extraction Extraction protocol used for this Extraction object
private Protocol_labeling	protocol_labeling Labeling protocol used for this Labeling object
private int	rin_number RNA integrity number fir this Extraction object
private java.lang.String	sample_ref Reference of this Sample object
private java.lang.String	stade Cancer stade of this Subject object
private java.lang.String	subject_ref Reference of this Subject object
private java.lang.String	tissue Tissue Object from which this Sample object come from

Constructor Summary

Labeling()
Default constructor

Labeling(int labeling_id)
Constructs a Labeling object from an existing Labeling ID

Method Summary

void	delete() This function delete this labeling Object from database
double	getAmount_input() ARN Amount input of this Labeling object
double	getAmount_output() ARN Amount output of this Labeling object
double	getAmpli_amount() RNA available_amount after amplification
double	getAmpli_concentration() Concentration of ARN after amplification
java.lang.String	getCell_type() cell_type corresponding to this Subject object
double	getCy_pmol() Cy pmol for this Extraction Object
java.util.Date	getDate_extraction() Date of creation of this Extraction object
java.util.Date	getDate_labeling() Creation Date this Labeling object
java.util.Date	getDate_sample() Creation date of this Sample object
java.util.Date	getDate_subject() Creation date of this Subject object
java.lang.String	getDisease() Disease of this Subject object
java.lang.String	getDvt_stage() Developpment stage of this Subject object
double	getExt_amount() RNA available_amount of this Extraction object
double	getExt_concentration() Concentration of ARN of this Extraction object
java.lang.String	getExtraction_ref() Reference of this Extraction object
java.lang.String	getGenotype() Genotype of this Subject object
java.lang.String	getGrade() Cancer grade of this Subject object
java.lang.String	getHistology() Cancer histology of this Subject object
int	getHybridization_id() ID of the corresponding Hybridization Object
int	getLabeling_id() ID of this Labeling object
java.lang.String	getLabeling_ref() Reference of this Labeling object
Labeling_type	getLabeling_type() Labeling type of this Labeling object
java.lang.String	getMark() Mark type for this Labeling Object
Nucleic_acid_type	getNucleic_acid_type() Nucleic acid type of this Extraction object
Organism	getOrganism() Organism corresponding to this Subject object
java.lang.String	getOrigin() Origin of this Subject object
Protocol_amplification	getProtocol_amplification() Protocol_amplification Object used for this Extraction object
Protocol_extraction	getProtocol_extraction() Extraction protocol used for this Extraction object
Protocol_labeling	getProtocol_labeling() Labeling protocol used for this Labeling object
int	getRin_number() RNA integrity number for this Extraction object
java.lang.String	getSample_ref() Reference of this Sample object
java.lang.String	getStade() Cancer stade of this Subject object
java.lang.String	getSubject_ref() Reference of this Subject object
java.lang.String	getTissue() Tissue Object from which this Sample object come from
void	loadParams(java.util.Hashtable hashParams) This function loadParams from HTML form.
boolean	save() This function save or update Labeling Objects into database
void	setAmount_input(double amount_input)
void	setAmount_output(double amount_output)
void	setAmpli_amount(double ampli_amount)
void	setAmpli_concentration(double ampli_concentration)
void	setCell_type(java.lang.String cell_type)
void	setCy_pmol(double cy_pmol)
void	setDate_extraction(java.util.Date date_extraction)
void	setDate_labeling(java.util.Date date_labeling)
void	setDate_sample(java.util.Date date_sample)
void	setDate_subject(java.util.Date date_subject)
void	setDisease(java.lang.String disease)
void	setDvt_stage(java.lang.String dvt_stage)
void	setExt_amount(double ext_amount)
void	setExt_concentration(double ext_concentration)
void	setExtraction_ref(java.lang.String extraction_ref)
void	setGenotype(java.lang.String genotype)
void	setGrade(java.lang.String grade)
void	setHistology(java.lang.String histology)
void	setHybridization_id(int hybridization_id)
void	setLabeling_id(int labeling_id)
void	setLabeling_ref(java.lang.String labeling_ref)
void	setLabeling_type(Labeling_type labeling_type)
void	setMark(java.lang.String mark)
void	setNucleic_acid_type(Nucleic_acid_type nucleic_acid_type)
void	setOrganism(Organism organism)
void	setOrigin(java.lang.String origin)
void	setProtocol_amplification(Protocol_amplification protocol_amplification)
void	setProtocol_extraction(Protocol_extraction protocol_extraction)
void	setProtocol_labeling(Protocol_labeling protocol_labeling)
void	setRin_number(int rin_number)
void	setSample_ref(java.lang.String sample_ref)
void	setStade(java.lang.String stade)
void	setSubject_ref(java.lang.String subject_ref)
void	setTissue(java.lang.String tissue)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

labeling_id

private int labeling_id

ID of this Labeling object

hybridization_id

private int hybridization_id

ID of the corresponding Hybridization Object

labeling_type

private Labeling_type labeling_type

Labeling_type Object of this Labeling object

labeling_ref

private java.lang.String labeling_ref

Reference of this Labeling object

extraction_ref

private java.lang.String extraction_ref

Reference of this Extraction object

sample_ref

private java.lang.String sample_ref

Reference of this Sample object

subject_ref

private java.lang.String subject_ref

Reference of this Subject object

date_labeling

private java.util.Date date_labeling

Creation Date this Labeling object

date_extraction

private java.util.Date date_extraction

Date of creation of this Extraction object

date_sample

private java.util.Date date_sample

Creation date of this Sample object

date_subject

private java.util.Date date_subject

Creation date of this Subject object

protocol_labeling

private Protocol_labeling protocol_labeling

Labeling protocol used for this Labeling object

protocol_extraction

private Protocol_extraction protocol_extraction

Extraction protocol used for this Extraction object

protocol_amplification

private Protocol_amplification protocol_amplification

Protocol_amplification Object for this Extraction object

nucleic_acid_type

private Nucleic_acid_type nucleic_acid_type

Nucleic acid type of this Extraction object

amount_input

private double amount_input

ARN Amount input of this Labeling object

amount_output

private double amount_output

ARN Amount output of this Labeling object

cy_pmol

private double cy_pmol

Cy pmol for this Extraction Object

rin_number

private int rin_number

RNA integrity number fir this Extraction object

mark

private java.lang.String mark

Mark type for this Labeling Object

tissue

private java.lang.String tissue

Tissue Object from which this Sample object come from

organism

private Organism organism

Organism corresponding to this Subject object

origin

private java.lang.String origin

Origin of this Subject object

cell_type

private java.lang.String cell_type

cell_type corresponding to this Subject object

dvt_stage

private java.lang.String dvt_stage

Developpment stage of this Subject object

genotype

private java.lang.String genotype

Genotype of this Subject object

disease

private java.lang.String disease

Disease of this Subject object

stade

private java.lang.String stade

Cancer stade of this Subject object

grade

private java.lang.String grade

Cancer grade of this Subject object

histology

private java.lang.String histology

Cancer histology of this Subject object

ext_concentration

private double ext_concentration

Concentration of ARN of this Extraction object

ext_amount

private double ext_amount

RNA available_amount of this Extraction object

ampli_amount

private double ampli_amount

RNA available_amount after amplification

ampli_concentration

private double ampli_concentration

Concentration of ARN after amplification

Constructor Detail

Labeling

public Labeling()

Default constructor

Labeling

public Labeling(int labeling_id)

Constructs a Labeling object from an existing Labeling ID

Parameters:

labeling_id - ID of existing Labeling Object

See Also:

Labeling_type, Protocol_labeling, Protocol_extraction, Protocol_amplification, Nucleic_acid_type, Organism

Method Detail

getLabeling_id

public int getLabeling_id()

ID of this Labeling object

setLabeling_id

public void setLabeling_id(int labeling_id)

getHybridization_id

public int getHybridization_id()

ID of the corresponding Hybridization Object

setHybridization_id

public void setHybridization_id(int hybridization_id)

getLabeling_type

public Labeling_type getLabeling_type()

Labeling type of this Labeling object

setLabeling_type

public void setLabeling_type(Labeling_type labeling_type)

getLabeling_ref

public java.lang.String getLabeling_ref()

Reference of this Labeling object

setLabeling_ref

public void setLabeling_ref(java.lang.String labeling_ref)

getExtraction_ref

public java.lang.String getExtraction_ref()

Reference of this Extraction object

setExtraction_ref

public void setExtraction_ref(java.lang.String extraction_ref)

getSample_ref

public java.lang.String getSample_ref()

Reference of this Sample object

setSample_ref

public void setSample_ref(java.lang.String sample_ref)

getSubject_ref

public java.lang.String getSubject_ref()

Reference of this Subject object

setSubject_ref

public void setSubject_ref(java.lang.String subject_ref)

getDate_labeling

public java.util.Date getDate_labeling()

Creation Date this Labeling object

setDate_labeling

public void setDate_labeling(java.util.Date date_labeling)

getDate_extraction

public java.util.Date getDate_extraction()

Date of creation of this Extraction object

setDate_extraction

public void setDate_extraction(java.util.Date date_extraction)

getDate_sample

public java.util.Date getDate_sample()

Creation date of this Sample object

setDate_sample

public void setDate_sample(java.util.Date date_sample)

getDate_subject

public java.util.Date getDate_subject()

Creation date of this Subject object

setDate_subject

public void setDate_subject(java.util.Date date_subject)

getProtocol_labeling

public Protocol_labeling getProtocol_labeling()

Labeling protocol used for this Labeling object

setProtocol_labeling

public void setProtocol_labeling(Protocol_labeling protocol_labeling)

getProtocol_extraction

public Protocol_extraction getProtocol_extraction()

Extraction protocol used for this Extraction object

setProtocol_extraction

public void setProtocol_extraction(Protocol_extraction protocol_extraction)

getProtocol_amplification

public Protocol_amplification getProtocol_amplification()

Protocol_amplification Object used for this Extraction object

setProtocol_amplification

public void setProtocol_amplification(Protocol_amplification protocol_amplification)

getNucleic_acid_type

public Nucleic_acid_type getNucleic_acid_type()

Nucleic acid type of this Extraction object

setNucleic_acid_type

public void setNucleic_acid_type(Nucleic_acid_type nucleic_acid_type)

getAmount_input

public double getAmount_input()

ARN Amount input of this Labeling object

setAmount_input

public void setAmount_input(double amount_input)

getAmount_output

public double getAmount_output()

ARN Amount output of this Labeling object

setAmount_output

public void setAmount_output(double amount_output)

getCy_pmol

public double getCy_pmol()

Cy pmol for this Extraction Object

setCy_pmol

public void setCy_pmol(double cy_pmol)

getRin_number

public int getRin_number()

RNA integrity number for this Extraction object

setRin_number

public void setRin_number(int rin_number)

getMark

public java.lang.String getMark()

Mark type for this Labeling Object

setMark

public void setMark(java.lang.String mark)

getTissue

public java.lang.String getTissue()

Tissue Object from which this Sample object come from

setTissue

public void setTissue(java.lang.String tissue)

getOrganism

public Organism getOrganism()

Organism corresponding to this Subject object

setOrganism

public void setOrganism(Organism organism)

getOrigin

public java.lang.String getOrigin()

Origin of this Subject object

setOrigin

public void setOrigin(java.lang.String origin)

getCell_type

public java.lang.String getCell_type()

cell_type corresponding to this Subject object

setCell_type

public void setCell_type(java.lang.String cell_type)

getDvt_stage

public java.lang.String getDvt_stage()

Developpment stage of this Subject object

setDvt_stage

public void setDvt_stage(java.lang.String dvt_stage)

getGenotype

public java.lang.String getGenotype()

Genotype of this Subject object

setGenotype

public void setGenotype(java.lang.String genotype)

getDisease

public java.lang.String getDisease()

Disease of this Subject object

setDisease

public void setDisease(java.lang.String disease)

getStade

public java.lang.String getStade()

Cancer stade of this Subject object

setStade

public void setStade(java.lang.String stade)

getGrade

public java.lang.String getGrade()

Cancer grade of this Subject object

setGrade

public void setGrade(java.lang.String grade)

getHistology

public java.lang.String getHistology()

Cancer histology of this Subject object

setHistology

public void setHistology(java.lang.String histology)

getExt_concentration

public double getExt_concentration()

Concentration of ARN of this Extraction object

setExt_concentration

public void setExt_concentration(double ext_concentration)

getExt_amount

public double getExt_amount()

RNA available_amount of this Extraction object

setExt_amount

public void setExt_amount(double ext_amount)

getAmpli_concentration

public double getAmpli_concentration()

Concentration of ARN after amplification

setAmpli_concentration

public void setAmpli_concentration(double ampli_concentration)

getAmpli_amount

public double getAmpli_amount()

RNA available_amount after amplification

setAmpli_amount

public void setAmpli_amount(double ampli_amount)

loadParams

public void loadParams(java.util.Hashtable hashParams)

This function loadParams from HTML form.

Parameters:

hashParams - Hashtable containing :
- labeling_id param ID of Labeling Object
- hybridization_id param ID of Hybridization Object
- labeling_type param ID of Labeling_type Object
- labeling_ref param
- extraction_ref param
- sample_ref param
- subject_ref param

- date_labeling param
- date_extraction param
- date_sample param
- date_subject param
- nucleic_acid_type param ID of Nucleic_acid_type object
- protocol_amplification param ID of Protocol_amplification object
- protocol_extraction param ID of Protocol_extraction object
- protocol_labeling param ID of Protocol_labeling object
- amount_input param
- amount_output param
- cy_pmol param
- ext_concentration param
- rin_number param
- tissue param ID of Tissue object
- organism param ID of Organism object
- origin param ID of Origin object
- cell_type param
- dvt_stage param
- genotype param
- disease param
- stade param
- grade param
- histology param
- ext_amount param
- mark param 'direct' or 'indirect'

See Also:

Labeling_type, Protocol_labeling, Protocol_extraction, Protocol_amplification, Nucleic_acid_type, Organism

save

public boolean save()

This function save or update Labeling Objects into database

Returns:

bool true if everything ok and false if error occur

See Also:

Labeling_type, Protocol_labeling, Protocol_extraction, Protocol_amplification, Nucleic_acid_type, Organism

delete

public void delete()

This function delete this labeling Object from database