Package object.common

Class Summary

Attribution	Description Attribution Object Infos : KLB - IPMC - 02/2004
Biostats	Description Biostats Objects : results of a statistical analysis Infos : KLB - IPMC - 08/2007
Blast	Description Methodes used for executing Blast program on the server Infos : KLB - IPMC - 08/2003
BlastBase	Description Describe Blast Base used to make Blast process in the application Infos : KLB - IPMC - 08/2003
BlastHit	Description When a Blast program is launch, the results are parsed and stored as BlastHit objects in an Hashtable results, data member of a Blast object Infos : KLB - IPMC - 08/2003
BlastTwoSeq	Description Object with which we can make Blast 2 sequences analysis, we can proceed to a Blast 2 sequences in several ways : - With accession_number present in our database - With position number on our IPMC MicroArray - With sequence directly entered in the form - With uploading file (not active for the moment) Infos : KLB - IPMC - 08/2003
Board	Description Board object represent the current Project_order opened in Java interface by the user user Infos : KLB - IPMC - 04/2004
Board_user	Description Board_user object represent all the Project_order define for one user Infos : KLB - IPMC - 06/2008
Commande	Description Commande object represent an order of Oligonucleotides.
Common	Description Object with which we can perform request in the database in the way to get informations about several objects Infos : KLB - IPMC - 08/2003
Contact_client	Description Contact_client object Infos : KLB - IPMC - 12/2005
Convert	Description Allow to convert annotations following the parameters received from the JSP page Infos : KLB - IPMC - 02/2008
CreationPlate	Description Object used in the creation plate 384 process from plate 96 Infos : KLB - IPMC - 01/2004
Diary	Description Diary event from developpement for Medlab and Mediante interface Infos : KLB - IPMC - 03/2008
Dilution	Description Dilution object Infos : KLB - IPMC - 01/2004
DisplayParams	Description Used to stock all parameters needed by ImageManager Object to make images of microarray Infos : KLB - IPMC - 07/2004
Enquete	Description Enquete object Infos : KLB - IPMC - 09/2006
ExecuteCmd	Description Allow to execute commande and the server system Infos : KLB - IPMC - 08/2003
Fichier	Description Fichier Object belong to Project_order Object Infos : KLB - IPMC - 07/2004
Foq	Description Foq Object Infos : KLB - IPMC - 12/2005
GeneCart	Description GeneCart Objects Infos : KLB - IPMC - 03/2007
Graph	Description Graph object Infos : KLB - IPMC - 05/2008
HypDistanceCalculator	This class calculates cumulative Hypergeometric distances, used for p-value calculations.
IdDescriptionObject	Description Object with key/value, use for the generation of ToolBox HTML form Infos : KLB - IPMC - 08/2003
ImageManager	Description ImageManager Object is used to access data from quantification file and display it at the screen in the Microarray data managment web interface Infos : KLB - IPMC - 08/2003
Journal	Description Journal object Infos : KLB - IPMC - 02/2005
Keyword	Description Keyword Object concern the decription of a Project_order Object Infos : KLB - IPMC - 02/2004
Link	Description This object allow to create Link in direction of Mediante, Ensembl, Refseq, Unigene, GENBANK_GENE_ID, Gene Ontology databases Infos : KLB - IPMC - 08/2003
MapEST	Description Describe relations between Oligos object and Ests matchs Infos : KLB - IPMC - 07/2007
OnMouseOver	Description Info-bulle with fonts and background colors generate by javascript Infos : KLB - IPMC - 08/2003
Order	Description Can be a microarray order or a hts order Objects Infos : KLB - IPMC - 05/2009
Plateforme	Description Plateforme Object for MEDIANTE DNA microarray production Infos : KLB - IPMC - 07/2004
Point	Description Point Object concerns microarrays spots and their position and annotations on the microarray Infos : KLB - IPMC - 01/2006
Project	Description Project of Oligo selection in the web interface Infos : KLB - IPMC - 08/2003
ProjectObject	Description Light Project Object Infos : KLB - IPMC - 08/2003
Public_database	Description Public_database Object is an Object corresponding to the references of an IPMC array with public databases as GEO or ArrayExpress Infos : KLB - IPMC - 09/2004
RNAfold	Description Infos : KLB - IPMC - 05/2008
RNAhybrid	Description Infos : KLB - IPMC - 06/2008
Rstat	Description A Rstat object allow to perform R queies to do microarray analysis Infos : KLB - IPMC - 10/2008
Search	Description Allow to Search the database for Gene like in the form in the web interface, this object can do several different search action following the parameters received from the Html Form Infos : KLB - IPMC - 08/2003
SequenceObject	Description Object contained in a Project Object, it contains all we have to know about a sequence submit by user and it's association with a Mediante oligo Infos : KLB - IPMC - 08/2003
SessionBlastObject	Description This object allowed to launch Blast whith parameters received from an HTML form Infos : KLB - IPMC - 12/2003
SessionObject	Description Object stocked in the Browser Session, it contains several Other Objects needed during navigation in the Web interface Infos : KLB - IPMC - 08/2003
Spidey	Description Spidey is the class which do all graph in the application Infos : KLB - IPMC - 08/2003
ToolBox	Description ToolBox object are used to display informations in Select Html Box Infos : KLB - IPMC - 01/2004
ToolBoxString	Description ToolBoxString object are used to display informations in Select Html Box Infos : KLB - IPMC - 12/2008
Toptable	Description TopTable Objects : Top Table of a statistical analysis for an experimental condition Infos : KLB - IPMC - 10/2007
User	Description User Object Infos : KLB - IPMC - 08/2003
Xhtml	Description This object is the main key to parse XML config files of the applications Infos : KLB - IPMC - 08/2003