object.annotation
Class Oligo_adhoc_match

java.lang.Object
  object.annotation.Oligo_adhoc_match

All Implemented Interfaces:

java.io.Serializable

public class Oligo_adhoc_match
extends java.lang.Object
implements java.io.Serializable

Description
Oligo_adhoc_match Object belong to an Oligo_adhoc Object
Infos : KLB - IPMC - 02/2006

See Also:

GenomicPosition, Serialized Form

Field Summary

private java.lang.String	context Genomic context for this Oligo_adhoc_match Object
private java.lang.String	description Description concerning this Oligo_adhoc_match Object
private GenomicPosition	genomicPosition GenomicPosition concerning this Oligo_adhoc_match Object
private java.lang.String	sanger_id Sanger_id for this Oligo_adhoc_match Object
private java.lang.String	sanger_ref Sanger_ref for this Oligo_adhoc_match Object

Constructor Summary

Oligo_adhoc_match()
Default constructor

Oligo_adhoc_match(Organism organism, java.lang.String chromosome, java.lang.String strand, int start, int end, java.lang.String description, java.lang.String sanger_ref, java.lang.String sanger_id, java.lang.String context)
Constructs an Oligo_adhoc_match object

Method Summary

java.lang.String	getContext() Genomic context for this Oligo_adhoc_match Object
java.lang.String	getDescription() Description concerning this Oligo_adhoc_match Object
GenomicPosition	getGenomicPosition() GenomicPosition concerning this Oligo_adhoc_match Object
java.lang.String	getSanger_id() Sanger_id for this Oligo_adhoc_match Object
java.lang.String	getSanger_ref() Sanger_ref for this Oligo_adhoc_match Object
void	setContext(java.lang.String context)
void	setDescription(java.lang.String description)
void	setGenomicPosition(GenomicPosition genomicPosition)
void	setSanger_id(java.lang.String sanger_id)
void	setSanger_ref(java.lang.String sanger_ref)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

genomicPosition

private GenomicPosition genomicPosition

GenomicPosition concerning this Oligo_adhoc_match Object

description

private java.lang.String description

Description concerning this Oligo_adhoc_match Object

sanger_ref

private java.lang.String sanger_ref

Sanger_ref for this Oligo_adhoc_match Object

sanger_id

private java.lang.String sanger_id

Sanger_id for this Oligo_adhoc_match Object

context

private java.lang.String context

Genomic context for this Oligo_adhoc_match Object

Constructor Detail

Oligo_adhoc_match

public Oligo_adhoc_match()

Default constructor

Oligo_adhoc_match

public Oligo_adhoc_match(Organism organism,
                         java.lang.String chromosome,
                         java.lang.String strand,
                         int start,
                         int end,
                         java.lang.String description,
                         java.lang.String sanger_ref,
                         java.lang.String sanger_id,
                         java.lang.String context)

Constructs an Oligo_adhoc_match object

Parameters:

organism -

chromosome -

strand -

start -

end -

Method Detail

getGenomicPosition

public GenomicPosition getGenomicPosition()

GenomicPosition concerning this Oligo_adhoc_match Object

setGenomicPosition

public void setGenomicPosition(GenomicPosition genomicPosition)

getDescription

public java.lang.String getDescription()

Description concerning this Oligo_adhoc_match Object

setDescription

public void setDescription(java.lang.String description)

getSanger_ref

public java.lang.String getSanger_ref()

Sanger_ref for this Oligo_adhoc_match Object

setSanger_ref

public void setSanger_ref(java.lang.String sanger_ref)

getSanger_id

public java.lang.String getSanger_id()

Sanger_id for this Oligo_adhoc_match Object

setSanger_id

public void setSanger_id(java.lang.String sanger_id)

getContext

public java.lang.String getContext()

Genomic context for this Oligo_adhoc_match Object

setContext

public void setContext(java.lang.String context)