object.annotation
Class GenomicPosition

java.lang.Object
  object.annotation.GenomicPosition

All Implemented Interfaces:

java.io.Serializable

public class GenomicPosition
extends java.lang.Object
implements java.io.Serializable

Description
GenomicPosition Object
Infos : KLB - IPMC - 02/2006

See Also:

Organism, Serialized Form

Field Summary

private java.lang.String	chromosome Chromosome string concerning this GenomicPosition Object
private int	chromosome_id Chromosome ID concerning this GenomicPosition Object
private int	end End position on the Chromosome
private Organism	organism Organism concerning this GenomicPosition Object
private int	start Start position on the Chromosome
private java.lang.String	strand Strand for this GenomicPosition Object

Constructor Summary

GenomicPosition()
Default constructor

GenomicPosition(Organism organism, java.lang.String chromosome, java.lang.String strand, int start, int end, int chromosome_id)
Constructs a GenomicPosition object

Method Summary

int	getChromosome_id() Chromosome ID concerned by this GenomicPosition Object
java.lang.String	getChromosome() Chromosome Object concerned by this GenomicPosition Object
int	getEnd() End position on the Chromosome Object concerned by this GenomicPosition Object
Organism	getOrganism() Organism concerned by this GenomicPosition Object
int	getStart() Start position on the Chromosome Object concerned by this GenomicPosition Object
java.lang.String	getStrand() Strand for this GenomicPosition Object
void	setChromosome_id(int chromosome_id)
void	setChromosome(java.lang.String chromosome)
void	setEnd(int end)
void	setOrganism(Organism organism)
void	setStart(int start)
void	setStrand(java.lang.String strand)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

organism

private Organism organism

Organism concerning this GenomicPosition Object

chromosome

private java.lang.String chromosome

Chromosome string concerning this GenomicPosition Object

chromosome_id

private int chromosome_id

Chromosome ID concerning this GenomicPosition Object

strand

private java.lang.String strand

Strand for this GenomicPosition Object

start

private int start

Start position on the Chromosome

end

private int end

End position on the Chromosome

Constructor Detail

GenomicPosition

public GenomicPosition()

Default constructor

GenomicPosition

public GenomicPosition(Organism organism,
                       java.lang.String chromosome,
                       java.lang.String strand,
                       int start,
                       int end,
                       int chromosome_id)

Constructs a GenomicPosition object

Parameters:

organism -

chromosome - String of chromosome name

strand -

start -

end -

chromosome_id - ID of chromosome Object

Method Detail

getOrganism

public Organism getOrganism()

Organism concerned by this GenomicPosition Object

setOrganism

public void setOrganism(Organism organism)

getChromosome

public java.lang.String getChromosome()

Chromosome Object concerned by this GenomicPosition Object

setChromosome

public void setChromosome(java.lang.String chromosome)

getStrand

public java.lang.String getStrand()

Strand for this GenomicPosition Object

setStrand

public void setStrand(java.lang.String strand)

getStart

public int getStart()

Start position on the Chromosome Object concerned by this GenomicPosition Object

setStart

public void setStart(int start)

getEnd

public int getEnd()

End position on the Chromosome Object concerned by this GenomicPosition Object

setEnd

public void setEnd(int end)

getChromosome_id

public int getChromosome_id()

Chromosome ID concerned by this GenomicPosition Object

setChromosome_id

public void setChromosome_id(int chromosome_id)