object.annotation
Class Genoligo_rel

java.lang.Object
  object.annotation.Genoligo_rel

All Implemented Interfaces:

java.io.Serializable

public class Genoligo_rel
extends java.lang.Object
implements java.io.Serializable

Description
Resume the relation beetween an Oligo Object and a Gene Object
Infos : KLB - IPMC - 01/2004

See Also:

Gene, Oligo, Serialized Form

Field Summary

private int	gene_id ID of an existing Gene object
private double	identity Percentage of identity of the Oligo Object on the sequence of the Gene Object
private java.lang.String	is_select Caracteristic of the selection or not of this relation for the Gene Object.
private int	oligo_id ID of an existing Oligo object
private int	position Start position of the Oligo Object on the sequence of the Gene Object
private int	size Size of the Oligo Object on the sequence of the Gene Object

Constructor Summary

Genoligo_rel()
Default constructor

Genoligo_rel(int oligo_id, int gene_id, int position, int size, double identity, java.lang.String is_select)
Constructs a Genoligo_rel object from several parameters

Method Summary

int	getGene_id() ID of an existing Gene object
double	getIdentity() Percentage of identity of the Oligo Object on the sequence of the Gene Object
java.lang.String	getIs_select() Caracteristic of the selection or not of this relation for the Gene Object.
int	getOligo_id() ID of an existing Oligo object
int	getPosition() Start position of the Oligo Object on the sequence of the Gene Object
int	getSize() size of the Oligo Object on the sequence of the Gene Object
void	setGene_id(int gene_id)
void	setIdentity(double identity)
void	setIs_select(java.lang.String is_select)
void	setOligo_id(int oligo_id)
void	setPosition(int position)
void	setSize(int size)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

oligo_id

private int oligo_id

ID of an existing Oligo object

gene_id

private int gene_id

ID of an existing Gene object

position

private int position

Start position of the Oligo Object on the sequence of the Gene Object

size

private int size

Size of the Oligo Object on the sequence of the Gene Object

identity

private double identity

Percentage of identity of the Oligo Object on the sequence of the Gene Object

is_select

private java.lang.String is_select

Caracteristic of the selection or not of this relation for the Gene Object. Symbolize that the best Oligo Object for this Gene is the Oligo of this relation

Constructor Detail

Genoligo_rel

public Genoligo_rel()

Default constructor

Genoligo_rel

public Genoligo_rel(int oligo_id,
                    int gene_id,
                    int position,
                    int size,
                    double identity,
                    java.lang.String is_select)

Constructs a Genoligo_rel object from several parameters

Parameters:

oligo_id - ID of existing Oligo Object

gene_id - ID of existing Gene Object

position - Start position of the oligo on the gene

size - Size of the match beetween the Oligo and the Gene

identity - Percentage of identity of the match beetween the Oligo and the Gene

is_select - Selection('Y') or not ('N') of the Oligo as the best for the Gene

Method Detail

getOligo_id

public int getOligo_id()

ID of an existing Oligo object

setOligo_id

public void setOligo_id(int oligo_id)

getGene_id

public int getGene_id()

ID of an existing Gene object

setGene_id

public void setGene_id(int gene_id)

getPosition

public int getPosition()

Start position of the Oligo Object on the sequence of the Gene Object

setPosition

public void setPosition(int position)

getSize

public int getSize()

size of the Oligo Object on the sequence of the Gene Object

setSize

public void setSize(int size)

getIdentity

public double getIdentity()

Percentage of identity of the Oligo Object on the sequence of the Gene Object

setIdentity

public void setIdentity(double identity)

getIs_select

public java.lang.String getIs_select()

Caracteristic of the selection or not of this relation for the Gene Object. Symbolize that the best Oligo Object for this Gene is the Oligo of this relation

setIs_select

public void setIs_select(java.lang.String is_select)