object.annotation
Class Chromosome

java.lang.Object
  object.annotation.Chromosome

All Implemented Interfaces:

java.io.Serializable

public class Chromosome
extends java.lang.Object
implements java.io.Serializable

Description
Chromosome Object
Infos : KLB - IPMC - 08/2003

See Also:

Gene, Serialized Form

Field Summary

private int	chromosome_id ID of Chromosome object
private java.lang.String	chromosome_name Description of this Chromosome
private java.lang.String	coord Coord of this Chromosome on the HTML map displayed in the Chromosome visualisation application part
private java.lang.String	coord2 Coord of this Chromosome on the HTML map displayed in the Viewer manager chromosome application part
private int	length Length of this Chromosome
private int	organism_id Organism owner of this Chromosome

Constructor Summary

Chromosome()
Default constructor

Chromosome(int chromosome_id)
Constructs a Chromosome object from a Chromosome ID

Method Summary

java.util.Vector	getAllCytoband() This function return a vector containing all Cytoband object for this Chromosome Object ordered by start position across the Chromosome Object.
java.util.Vector	getAllGenes() This function return a vector containing all Genes object for this Chromosome Object
int	getChromosome_id() ID of Chromosome object
java.lang.String	getChromosome_name() Description of this Chromosome
java.lang.String	getCoord() Coord of this Chromosome on th e HTML map displayed in the Chromosome visualisation application part
java.lang.String	getCoord2() Coord of this Chromosome on the HTML map displayed in the Viewer manager chromosome application part
int	getLength() Length of this Chromosome
int	getOrganism_id() Organism owner of this Chromosome
void	setChromosome_id(int chromosome_id)
void	setChromosome_name(java.lang.String chromosome_name)
void	setCoord(java.lang.String coord)
void	setCoord2(java.lang.String coord2)
void	setLength(int length)
void	setOrganism_id(int organism_id)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

chromosome_id

private int chromosome_id

ID of Chromosome object

organism_id

private int organism_id

Organism owner of this Chromosome

chromosome_name

private java.lang.String chromosome_name

Description of this Chromosome

length

private int length

Length of this Chromosome

coord

private java.lang.String coord

Coord of this Chromosome on the HTML map displayed in the Chromosome visualisation application part

coord2

private java.lang.String coord2

Coord of this Chromosome on the HTML map displayed in the Viewer manager chromosome application part

Constructor Detail

Chromosome

public Chromosome()

Default constructor

Chromosome

public Chromosome(int chromosome_id)

Constructs a Chromosome object from a Chromosome ID

Parameters:

chromosome_id - ID of an existing Chromosome Object

Method Detail

getChromosome_id

public int getChromosome_id()

ID of Chromosome object

setChromosome_id

public void setChromosome_id(int chromosome_id)

getOrganism_id

public int getOrganism_id()

Organism owner of this Chromosome

setOrganism_id

public void setOrganism_id(int organism_id)

getChromosome_name

public java.lang.String getChromosome_name()

Description of this Chromosome

setChromosome_name

public void setChromosome_name(java.lang.String chromosome_name)

getLength

public int getLength()

Length of this Chromosome

setLength

public void setLength(int length)

getCoord

public java.lang.String getCoord()

Coord of this Chromosome on th e HTML map displayed in the Chromosome visualisation application part

setCoord

public void setCoord(java.lang.String coord)

getCoord2

public java.lang.String getCoord2()

Coord of this Chromosome on the HTML map displayed in the Viewer manager chromosome application part

setCoord2

public void setCoord2(java.lang.String coord2)

getAllGenes

public java.util.Vector getAllGenes()

This function return a vector containing all Genes object for this Chromosome Object

Returns:

allGenes Vector containing all Genes object for this Chromosome Object

See Also:

Gene, Gene.Gene(int)

getAllCytoband

public java.util.Vector getAllCytoband()

This function return a vector containing all Cytoband object for this Chromosome Object
ordered by start position across the Chromosome Object.

Returns:

allCytoband Vector containing all Cytoband object for this Chromosome Object

See Also:

Cytoband, Cytoband.Cytoband(int)